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Re: ERA52ARL code compilation error
Posted: September 14th, 2021, 6:47 pm
by wtbjglp
Anna wrote: ↑July 16th, 2021, 7:27 am
sonny.zinn wrote: ↑June 3rd, 2021, 10:00 am
I realized that the HYSPLIT distribution for macOS does not contain the libhysplit.a file. The missing subroutines pakinp, pakndx, etc. are in the HYSPLIT library file. I will contact you via email.
Hello,
I am a first time HYSPLIT user and installed the May 2021 Release (Version 5.1.0) on a macOS. I have installed the ECMWF ecCodes package as well. I wish to convert ERA5 grib files to ARL format and thought I would use the era52arl.f program, but encountered the same problem that seethala.chellappan described in a previous post. Would it be possible to get access to the HYSPLIT library file that seems to be missing? My error is pasted below.
Kind regards,
Anna
ld: warning: dylib (/usr/local/Cellar/gcc/11.1.0_1/lib/gcc/11/libgfortran.dylib) was built for newer macOS version (11.3) than being linked (11.2)
ld: warning: dylib (/usr/local/Cellar/gcc/11.1.0_1/lib/gcc/11/libquadmath.dylib) was built for newer macOS version (11.3) than being linked (11.2)
Undefined symbols for architecture x86_64:
"_pakinp_", referenced from:
_MAIN__ in cchUTIw8.o
"_pakndx_", referenced from:
_MAIN__ in cchUTIw8.o
"_pakrec_", referenced from:
_MAIN__ in cchUTIw8.o
"_pakset_", referenced from:
_MAIN__ in cchUTIw8.o
ld: symbol(s) not found for architecture x86_64
collect2: error: ld returned 1 exit status
Hello,
Did you find a solution to the problem in your post? I also installed the May 2021 Release (Version 5.1.0) on a macOS and found that both the HYSPLIT library and the Makefile.inc file are missing in the distribution. I am also trying to convert ERA5 GRIB files to ARL format but I cannot execute the era52arl.f program. The below is the error message when I type 'make' in the hysplit/data2arl/era52arl directory:
Makefile:18: ../../Makefile.inc: No such file or directory
make: *** No rule to make target '../../Makefile.inc'. Stop.
I appreciate any advice.
Re: ERA52ARL code compilation error
Posted: December 3rd, 2021, 2:11 pm
by rmoore
Hi!
I am also having similar difficulty, when I run make to make the grib2arl files I get
ld: warning: directory not found for option '-L../library'
Ruth
Re: ERA52ARL code compilation error
Posted: December 6th, 2021, 1:05 am
by rmoore
Hi, I am also having this identical issue and was wondering if you got anywhere with this?
Thanks,
Ruth
Re: ERA52ARL code compilation error
Posted: December 6th, 2021, 1:15 am
by rmoore
Hi there,
I am also having this issue and find the solutions prescribed in the thread hard to follow - so am not sure how do go about getting the files to work for converting ERA5 to ARL files.
Would installing an older version of Hysplit fix this?
Thanks
Re: ERA52ARL code compilation error
Posted: December 8th, 2022, 2:26 am
by J7S
sonny.zinn wrote: ↑June 3rd, 2021, 10:00 am
I realized that the HYSPLIT distribution for macOS does not contain the libhysplit.a file. The missing subroutines pakinp, pakndx, etc. are in the HYSPLIT library file. I will contact you via email.
Hi there, I am having the same issue when compiling the era52arl.f90 file. I wonder how the missing libhysplit.a file issue on mac can be solved?
Thank you!
Re: ERA52ARL code compilation error
Posted: December 8th, 2022, 7:38 am
by sonny.zinn
There is a zip file containing the source code for a subset of the HYSPLIT library for compiling many HYSPLIT data converters. Download the hysplit_data2arl.zip from
https://www.ready.noaa.gov/HYSPLIT_data2arl.php. The zip file also contains the source code for data converters.
Re: ERA52ARL code compilation error
Posted: December 8th, 2022, 4:01 pm
by J7S
Thank you so much Sonny for your prompt reply! This resource is helpful! Is there a more specific guide on how to compile the subroutines in the library? This is new to me.
Re: ERA52ARL code compilation error
Posted: December 8th, 2022, 6:21 pm
by J7S
sonny.zinn wrote: ↑December 8th, 2022, 7:38 am
There is a zip file containing the source code for a subset the HYSPLIT library for compiling many HYSPLIT data converters. Download the hysplit_data2arl.zip from
https://www.ready.noaa.gov/HYSPLIT_data2arl.php. The zip file also contains the source code for data converters.
Thank you!! Making libhysplit.a in the library and linking the library has solved this issue!
Re: ERA52ARL code compilation error
Posted: February 16th, 2023, 9:04 pm
by kmr3675
Has anyone compiled and gotten this going for MERRA2? I am having these same issues compiling the mer2arl code and am having trouble figuring it out. I have looked at the Makefiles and Compile text and examples, but I am new to all of this so I don't really know what to do. Any help would be appreciated!
Thanks!